Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:162212215-162562216

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33 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Bmd1a 1 155962068 to 162317756 6355688 QTL bone mineral density 1a
Dnm3 1 161982453 to 162478034 495581 - protein coding gene dynamin 3
Tssr9708 1 162217487 to 162217508 21 + TSS region transcription start site region 9708
Dnm3os 1 162217623 to 162225550 7927 + antisense lncRNA gene dynamin 3, opposite strand
Tssr9709 1 162217657 to 162217671 14 + TSS region transcription start site region 9709
Tssr9710 1 162217688 to 162217717 29 + TSS region transcription start site region 9710
Mir199a-2 1 162217814 to 162217923 109 + miRNA gene microRNA 199a-2
Tssr9711 1 162217903 to 162217906 3 + TSS region transcription start site region 9711
Tssr9712 1 162218852 to 162218856 4 + TSS region transcription start site region 9712
Tssr9713 1 162221295 to 162221299 4 + TSS region transcription start site region 9713
Mir214 1 162223368 to 162223477 109 + miRNA gene microRNA 214
Tssr9714 1 162223459 to 162223461 2 + TSS region transcription start site region 9714
Tssr14615 1 162246773 to 162246775 2 - TSS region transcription start site region 14615
Aath2 1 162250061 to 162250061 0 QTL aortic arch atherosclerosis 2
Tssr14616 1 162274621 to 162274626 5 - TSS region transcription start site region 14616
Gm16101 1 162316092 to 162316521 429 + pseudogene predicted gene 16101
Elnt 1 162317638 to 194429220 32111582 QTL escape latencies during navigation task
Cfbw1 1 162317638 to 162317756 118 QTL cystic fibrosis body weight 1
D1Mit106 1 162317638 to 162317756 118 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 106
D1Mit107 1 162365239 to 162365340 101 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 107
Gm39688 1 162379896 to 162386091 6195 + lncRNA gene predicted gene, 39688
Tssr14617 1 162387215 to 162387216 1 - TSS region transcription start site region 14617
Mdq20 1 162458462 to 162458462 0 QTL mammary ductal QTL 20
Tssr14618 1 162460222 to 162460227 5 - TSS region transcription start site region 14618
Gm31985 1 162471426 to 162481653 10227 + lncRNA gene predicted gene, 31985
Cpgi930 1 162477233 to 162478277 1044 CpG island CpG island 930
Gm10176 1 162477680 to 162479943 2263 + protein coding gene predicted gene 10176
Tssr14619 1 162477946 to 162478001 55 - TSS region transcription start site region 14619
Tssr14620 1 162478004 to 162478022 18 - TSS region transcription start site region 14620
Gm46247 1 162500716 to 162500955 239 - pseudogene predicted gene, 46247
Eef1aknmt 1 162533671 to 162548345 14674 - protein coding gene EEF1A lysine and N-terminal methyltransferase
Cpgi931 1 162548198 to 162548755 557 CpG island CpG island 931
Tssr14621 1 162548484 to 162548545 61 - TSS region transcription start site region 14621