Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:155083497-156033552

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127 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi881 1 155082947 to 155084061 1114 CpG island CpG island 881
Tssr9524 1 155083707 to 155083733 26 + TSS region transcription start site region 9524
Tssr14334 1 155084152 to 155084161 9 - TSS region transcription start site region 14334
Ier5 1 155096367 to 155099636 3269 - protein coding gene immediate early response 5
Tssr249 1 155096727 to 155096748 21 - TSS region transcription start site region 249
Cpgi882 1 155097984 to 155099856 1872 CpG island CpG island 882
Tssr14335 1 155097986 to 155098002 16 - TSS region transcription start site region 14335
Tssr9525 1 155098193 to 155098231 38 + TSS region transcription start site region 9525
Tssr9526 1 155098233 to 155098259 26 + TSS region transcription start site region 9526
Tssr9527 1 155098284 to 155098296 12 + TSS region transcription start site region 9527
Tssr14336 1 155098732 to 155098746 14 - TSS region transcription start site region 14336
Tssr14337 1 155099470 to 155099481 11 - TSS region transcription start site region 14337
Tssr14338 1 155099533 to 155099544 11 - TSS region transcription start site region 14338
Tssr14339 1 155099630 to 155099633 3 - TSS region transcription start site region 14339
Tssr9528 1 155104966 to 155104968 2 + TSS region transcription start site region 9528
Gm41981 1 155112307 to 155119199 6892 - lncRNA gene predicted gene, 41981
Tssr9529 1 155117068 to 155117071 3 + TSS region transcription start site region 9529
Gm30922 1 155122382 to 155130614 8232 + lncRNA gene predicted gene, 30922
Tssr9530 1 155122418 to 155122425 7 + TSS region transcription start site region 9530
Mr1 1 155127872 to 155146813 18941 - protein coding gene major histocompatibility complex, class I-related
Tssr14340 1 155128502 to 155128533 31 - TSS region transcription start site region 14340
Tssr9531 1 155145850 to 155145855 5 + TSS region transcription start site region 9531
Tssr14341 1 155146755 to 155146789 34 - TSS region transcription start site region 14341
Tssr14342 1 155146791 to 155146820 29 - TSS region transcription start site region 14342
Cpgi883 1 155158473 to 155159419 946 CpG island CpG island 883
Stx6 1 155158677 to 155207567 48890 + protein coding gene syntaxin 6
Tssr9532 1 155158684 to 155158701 17 + TSS region transcription start site region 9532
Tssr9533 1 155158704 to 155158776 72 + TSS region transcription start site region 9533
Tssr14343 1 155159293 to 155159339 46 - TSS region transcription start site region 14343
Tssr9534 1 155161538 to 155161544 6 + TSS region transcription start site region 9534
D1Mit55 1 155166854 to 155167004 150 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 55
Gm8850 1 155179801 to 155180388 587 + pseudogene predicted gene 8850
Gm46166 1 155206993 to 155212060 5067 - lncRNA gene predicted gene, 46166
BC034090 1 155212471 to 155244444 31973 - protein coding gene cDNA sequence BC034090
Tssr14344 1 155230129 to 155230143 14 - TSS region transcription start site region 14344
Tssr14345 1 155230191 to 155230200 9 - TSS region transcription start site region 14345
Gm37622 1 155231304 to 155233159 1855 + antisense lncRNA gene predicted gene, 37622
Tssr14346 1 155232576 to 155232589 13 - TSS region transcription start site region 14346
Tssr14347 1 155232590 to 155232595 5 - TSS region transcription start site region 14347
Tssr14348 1 155232597 to 155232606 9 - TSS region transcription start site region 14348
Tssr14349 1 155232609 to 155232637 28 - TSS region transcription start site region 14349
Tssr14350 1 155232676 to 155232704 28 - TSS region transcription start site region 14350
Tssr14351 1 155232710 to 155232729 19 - TSS region transcription start site region 14351
Gm31102 1 155243076 to 155256851 13775 + lncRNA gene predicted gene, 31102
Cpgi884 1 155243981 to 155245144 1163 CpG island CpG island 884
Tssr14352 1 155244460 to 155244497 37 - TSS region transcription start site region 14352
Tssr14353 1 155244499 to 155244544 45 - TSS region transcription start site region 14353
Tssr9535 1 155244611 to 155244622 11 + TSS region transcription start site region 9535
Xpr1 1 155275701 to 155417415 141714 - protein coding gene xenotropic and polytropic retrovirus receptor 1
Tssr14354 1 155276376 to 155276381 5 - TSS region transcription start site region 14354
Tssr14355 1 155279356 to 155279370 14 - TSS region transcription start site region 14355
Tssr14356 1 155279407 to 155279424 17 - TSS region transcription start site region 14356
Tssr14357 1 155280434 to 155280438 4 - TSS region transcription start site region 14357
Gm22569 1 155315966 to 155316089 123 + miRNA gene predicted gene, 22569
D1Dcr13 1 155339386 to 155339486 100 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 13
Gm17974 1 155348551 to 155349053 502 + pseudogene predicted gene, 17974
Cpgi885 1 155416689 to 155417669 980 CpG island CpG island 885
Tssr14358 1 155417261 to 155417272 11 - TSS region transcription start site region 14358
Tssr14359 1 155417283 to 155417323 40 - TSS region transcription start site region 14359
Tssr14360 1 155417336 to 155417358 22 - TSS region transcription start site region 14360
Tssr14361 1 155417366 to 155417386 20 - TSS region transcription start site region 14361
Tssr14362 1 155417394 to 155417435 41 - TSS region transcription start site region 14362
D1Dcr14 1 155426075 to 155426170 95 DNA segment DNA Segment, Chr 1, Derry C. Roopenian 14
Gm31713 1 155427015 to 155438508 11493 - lncRNA gene predicted gene, 31713
Tssr9536 1 155447467 to 155447483 16 + TSS region transcription start site region 9536
Gm31772 1 155449553 to 155459769 10216 + lncRNA gene predicted gene, 31772
Gm5532 1 155520173 to 155527111 6938 - lincRNA gene predicted gene 5532
Tssr14363 1 155527083 to 155527091 8 - TSS region transcription start site region 14363
Tssr14364 1 155527133 to 155527155 22 - TSS region transcription start site region 14364
Tssr14365 1 155527156 to 155527165 9 - TSS region transcription start site region 14365
Tssr14366 1 155527172 to 155527186 14 - TSS region transcription start site region 14366
Cpgi886 1 155557794 to 155558832 1038 CpG island CpG island 886
Acbd6 1 155558098 to 155687474 129376 + protein coding gene acyl-Coenzyme A binding domain containing 6
Tssr9537 1 155558112 to 155558232 120 + TSS region transcription start site region 9537
Tssr9538 1 155558319 to 155558402 83 + TSS region transcription start site region 9538
Tssr9539 1 155558411 to 155558421 10 + TSS region transcription start site region 9539
Tssr9540 1 155558497 to 155558552 55 + TSS region transcription start site region 9540
Lhx4 1 155698031 to 155751684 53653 - protein coding gene LIM homeobox protein 4
D1Mit34 1 155706491 to 155706677 186 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 34
Shali5 1 155706491 to 186261999 30555508 QTL survival time to hyperoxic acute lung injury 5
D1Dcr5 1 155713164 to 155713291 127 DNA segment DNA segment, Chr 1, Derry C. Roopenian 5
Cpgi887 1 155736290 to 155738274 1984 CpG island CpG island 887
Cpgi888 1 155740518 to 155743383 2865 CpG island CpG island 888
Tssr14367 1 155742001 to 155742046 45 - TSS region transcription start site region 14367
Tssr14368 1 155742125 to 155742136 11 - TSS region transcription start site region 14368
Tssr9541 1 155742509 to 155742515 6 + TSS region transcription start site region 9541
Tssr14369 1 155751719 to 155751738 19 - TSS region transcription start site region 14369
Gm37089 1 155766146 to 155766274 128 + pseudogene predicted gene, 37089
Qsox1 1 155778155 to 155812899 34744 - protein coding gene quiescin Q6 sulfhydryl oxidase 1
Tssr14370 1 155779096 to 155779101 5 - TSS region transcription start site region 14370
Gm37539 1 155789124 to 155789358 234 + unclassified gene predicted gene, 37539
Cpgi889 1 155812232 to 155813468 1236 CpG island CpG island 889
Tssr14371 1 155812805 to 155812857 52 - TSS region transcription start site region 14371
Tssr14372 1 155812859 to 155812883 24 - TSS region transcription start site region 14372
Tssr14373 1 155812890 to 155812906 16 - TSS region transcription start site region 14373
Tssr14374 1 155813043 to 155813056 13 - TSS region transcription start site region 14374
Gm37571 1 155818494 to 155859591 41097 + antisense lncRNA gene predicted gene, 37571
Cep350 1 155844964 to 155973255 128291 - protein coding gene centrosomal protein 350
Gm38038 1 155855449 to 155855707 258 + pseudogene predicted gene, 38038
Tssr14375 1 155861414 to 155861429 15 - TSS region transcription start site region 14375
Gm36934 1 155864960 to 155865265 305 + pseudogene predicted gene, 36934
Gm37383 1 155881802 to 155882546 744 - unclassified gene predicted gene, 37383
Tssr14376 1 155947714 to 155947719 5 - TSS region transcription start site region 14376
Gm23744 1 155954574 to 155954722 148 + snRNA gene predicted gene, 23744
Tlln 1 155962068 to 159562802 3600734 QTL tail length
D1Mit451 1 155962068 to 155962217 149 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 451
Bmd1a 1 155962068 to 162317756 6355688 QTL bone mineral density 1a
Tssr9542 1 155972500 to 155972549 49 + TSS region transcription start site region 9542
Cpgi890 1 155972544 to 155973804 1260 CpG island CpG island 890
Tssr14377 1 155973173 to 155973204 31 - TSS region transcription start site region 14377
Tssr14378 1 155973205 to 155973259 54 - TSS region transcription start site region 14378
Gm9694 1 155973318 to 155974506 1188 + unclassified gene predicted gene 9694
Tssr14379 1 155973355 to 155973372 17 - TSS region transcription start site region 14379
Tssr14380 1 156000411 to 156000415 4 - TSS region transcription start site region 14380
Tor1aip1 1 156004599 to 156036480 31881 - protein coding gene torsin A interacting protein 1
Tssr9543 1 156005394 to 156005420 26 + TSS region transcription start site region 9543
Tssr14381 1 156005690 to 156005709 19 - TSS region transcription start site region 14381
Tssr14382 1 156005739 to 156005785 46 - TSS region transcription start site region 14382
Tssr14383 1 156005790 to 156005810 20 - TSS region transcription start site region 14383
Tssr14384 1 156005832 to 156005857 25 - TSS region transcription start site region 14384
Tssr14385 1 156005874 to 156005888 14 - TSS region transcription start site region 14385
Tssr14386 1 156005889 to 156005907 18 - TSS region transcription start site region 14386
Tssr14387 1 156006212 to 156006231 19 - TSS region transcription start site region 14387
Tssr14388 1 156007708 to 156007722 14 - TSS region transcription start site region 14388
9430034N14Rik 1 156026223 to 156030007 3784 - unclassified gene RIKEN cDNA 9430034N14 gene
Tssr14389 1 156029769 to 156029793 24 - TSS region transcription start site region 14389
Tssr14390 1 156032948 to 156032978 30 - TSS region transcription start site region 14390