Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:154017381-155067414

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm30327 1 153991063 to 154024648 33585 + lncRNA gene predicted gene, 30327
Gm28286 1 154027363 to 154034301 6938 - lincRNA gene predicted gene 28286
Cpgi872 1 154034105 to 154034257 152 CpG island CpG island 872
A830008E24Rik 1 154037597 to 154117951 80354 - lincRNA gene RIKEN cDNA A830008E24 gene
Gm46165 1 154063544 to 154112909 49365 + lncRNA gene predicted gene, 46165
Tssr9512 1 154078024 to 154078025 1 + TSS region transcription start site region 9512
Tssr9513 1 154078232 to 154078242 10 + TSS region transcription start site region 9513
Gm25336 1 154080095 to 154080199 104 - snoRNA gene predicted gene, 25336
Tssr14296 1 154080709 to 154080752 43 - TSS region transcription start site region 14296
Tssr14297 1 154116144 to 154116171 27 - TSS region transcription start site region 14297
Tssr14298 1 154116176 to 154116187 11 - TSS region transcription start site region 14298
Tssr14299 1 154117630 to 154117642 12 - TSS region transcription start site region 14299
Tssr14300 1 154117847 to 154117856 9 - TSS region transcription start site region 14300
Gm30388 1 154196312 to 154204040 7728 - lncRNA gene predicted gene, 30388
Zfp648 1 154201187 to 154205689 4502 + protein coding gene zinc finger protein 648
Tssr9514 1 154201552 to 154201560 8 + TSS region transcription start site region 9514
Tssr9515 1 154201565 to 154201577 12 + TSS region transcription start site region 9515
Cpgi873 1 154204663 to 154205654 991 CpG island CpG island 873
Tssr9516 1 154204879 to 154204890 11 + TSS region transcription start site region 9516
Tssr9517 1 154204906 to 154204919 13 + TSS region transcription start site region 9517
Tssr9518 1 154205147 to 154205149 2 + TSS region transcription start site region 9518
D1Mit42 1 154215380 to 154215632 252 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 42
4930452N14Rik 1 154241521 to 154256906 15385 - lincRNA gene RIKEN cDNA 4930452N14 gene
4930532M18Rik 1 154255689 to 154270416 14727 + lincRNA gene RIKEN cDNA 4930532M18 gene
Tssr9519 1 154256982 to 154256984 2 + TSS region transcription start site region 9519
Gm30465 1 154261674 to 154264071 2397 - lncRNA gene predicted gene, 30465
D1Mit450 1 154287720 to 154287837 117 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 450
D1Mit523 1 154304366 to 154304485 119 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-523
n-R5s220 1 154311408 to 154311527 119 - rRNA gene nuclear encoded rRNA 5S 220
Gm18727 1 154323056 to 154323608 552 - pseudogene predicted gene, 18727
D1Mit201 1 154345076 to 154345195 119 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 201
Cacna1e 1 154390731 to 154884501 493770 - protein coding gene calcium channel, voltage-dependent, R type, alpha 1E subunit
Tssr14301 1 154394585 to 154394590 5 - TSS region transcription start site region 14301
Tssr14302 1 154395152 to 154395158 6 - TSS region transcription start site region 14302
Cpgi874 1 154398381 to 154398877 496 CpG island CpG island 874
D1Mit142 1 154524058 to 154524178 120 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 142
Tssr14303 1 154542381 to 154542414 33 - TSS region transcription start site region 14303
Cpgi875 1 154725658 to 154725971 313 CpG island CpG island 875
Tssr14304 1 154726376 to 154726387 11 - TSS region transcription start site region 14304
Cpgi876 1 154726434 to 154727298 864 CpG island CpG island 876
Tssr14305 1 154726456 to 154726461 5 - TSS region transcription start site region 14305
Tssr14306 1 154726660 to 154726668 8 - TSS region transcription start site region 14306
Tssr14307 1 154726688 to 154726700 12 - TSS region transcription start site region 14307
Tssr14308 1 154726704 to 154726714 10 - TSS region transcription start site region 14308
Tssr14309 1 154726718 to 154726741 23 - TSS region transcription start site region 14309
Tssr14310 1 154726746 to 154726772 26 - TSS region transcription start site region 14310
Cpgi877 1 154799193 to 154799692 499 CpG island CpG island 877
Tssr14311 1 154816906 to 154816926 20 - TSS region transcription start site region 14311
Tssr14312 1 154816931 to 154816955 24 - TSS region transcription start site region 14312
Tssr14313 1 154816956 to 154816973 17 - TSS region transcription start site region 14313
Tssr14314 1 154883983 to 154884000 17 - TSS region transcription start site region 14314
Tssr14315 1 154884006 to 154884019 13 - TSS region transcription start site region 14315
Tssr14316 1 154884170 to 154884179 9 - TSS region transcription start site region 14316
Tssr14317 1 154884185 to 154884197 12 - TSS region transcription start site region 14317
Cpgi878 1 154884322 to 154884741 419 CpG island CpG island 878
Tssr14318 1 154884346 to 154884357 11 - TSS region transcription start site region 14318
Tssr14319 1 154884375 to 154884390 15 - TSS region transcription start site region 14319
Tssr14320 1 154884393 to 154884417 24 - TSS region transcription start site region 14320
Tssr14321 1 154884477 to 154884485 8 - TSS region transcription start site region 14321
Tssr14322 1 154884500 to 154884513 13 - TSS region transcription start site region 14322
Tssr14323 1 154884520 to 154884530 10 - TSS region transcription start site region 14323
Gm30521 1 154905780 to 154929198 23418 - lncRNA gene predicted gene, 30521
D1Mit397 1 154908169 to 154908279 110 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 397
Gm41976 1 154911843 to 154914496 2653 + lncRNA gene predicted gene, 41976
Tssr14324 1 154929184 to 154929195 11 - TSS region transcription start site region 14324
Gm30602 1 154968466 to 154974985 6519 - lncRNA gene predicted gene, 30602
Gm41977 1 155008692 to 155021148 12456 - lncRNA gene predicted gene, 41977
Gm29282 1 155011332 to 155057179 45847 - lincRNA gene predicted gene 29282
Gm41980 1 155021248 to 155061614 40366 - lncRNA gene predicted gene, 41980
Cpgi879 1 155029154 to 155029423 269 CpG island CpG island 879
Gm29441 1 155031739 to 155031949 210 + pseudogene predicted gene 29441
Gm41979 1 155040351 to 155048694 8343 - lncRNA gene predicted gene, 41979
Tssr14325 1 155050280 to 155050286 6 - TSS region transcription start site region 14325
Tssr14326 1 155051299 to 155051306 7 - TSS region transcription start site region 14326
Tssr14327 1 155054750 to 155054761 11 - TSS region transcription start site region 14327
Tssr247 1 155054769 to 155054780 11 - TSS region transcription start site region 247
Tssr14328 1 155054802 to 155054811 9 - TSS region transcription start site region 14328
Tssr14329 1 155054857 to 155054864 7 - TSS region transcription start site region 14329
Tssr9520 1 155054972 to 155055015 43 + TSS region transcription start site region 9520
Tssr14330 1 155055179 to 155055185 6 - TSS region transcription start site region 14330
Tssr248 1 155059523 to 155059530 7 - TSS region transcription start site region 248
Tssr14331 1 155059534 to 155059545 11 - TSS region transcription start site region 14331
Tssr14332 1 155059548 to 155059557 9 - TSS region transcription start site region 14332
Tssr14333 1 155059558 to 155059575 17 - TSS region transcription start site region 14333
Cpgi880 1 155059662 to 155059887 225 CpG island CpG island 880
Tssr9521 1 155059686 to 155059710 24 + TSS region transcription start site region 9521
Tssr9522 1 155059944 to 155059946 2 + TSS region transcription start site region 9522
Tssr9523 1 155062301 to 155062319 18 + TSS region transcription start site region 9523
Gm9530 1 155063447 to 155083266 19819 - lincRNA gene predicted gene 9530