Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:135913219-136130030

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32 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pkp1 1 135871395 to 135919207 47812 - protein coding gene plakophilin 1
Cpgi800 1 135918520 to 135919536 1016 CpG island CpG island 800
Tssr13904 1 135919124 to 135919135 11 - TSS region transcription start site region 13904
Tssr13905 1 135919164 to 135919175 11 - TSS region transcription start site region 13905
Tssr13906 1 135919199 to 135919212 13 - TSS region transcription start site region 13906
Tssr13907 1 135919294 to 135919307 13 - TSS region transcription start site region 13907
Tssr13908 1 135919321 to 135919339 18 - TSS region transcription start site region 13908
Tssr13909 1 135919342 to 135919353 11 - TSS region transcription start site region 13909
Tssr13910 1 135919354 to 135919359 5 - TSS region transcription start site region 13910
Tssr228 1 135924362 to 135924366 4 + TSS region transcription start site region 228
Igfn1 1 135953578 to 136006342 52764 - protein coding gene immunoglobulin-like and fibronectin type III domain containing 1
Tssr13911 1 135984287 to 135984303 16 - TSS region transcription start site region 13911
Tssr13912 1 135984307 to 135984321 14 - TSS region transcription start site region 13912
D1Mit103 1 135985679 to 135985793 114 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 103
Cpgi801 1 136007428 to 136007896 468 CpG island CpG island 801
Tmem9 1 136008219 to 136035030 26811 + protein coding gene transmembrane protein 9
Tssr9034 1 136015326 to 136015331 5 + TSS region transcription start site region 9034
Cpgi802 1 136017969 to 136018325 356 CpG island CpG island 802
Tssr9035 1 136018000 to 136018042 42 + TSS region transcription start site region 9035
Tssr9036 1 136018063 to 136018068 5 + TSS region transcription start site region 9036
Tssr13913 1 136040894 to 136040927 33 - TSS region transcription start site region 13913
Cpgi803 1 136050498 to 136051763 1265 CpG island CpG island 803
Ascl5 1 136050804 to 136051370 566 + protein coding gene achaete-scute family bHLH transcription factor 5
Tssr9037 1 136052754 to 136052761 7 + TSS region transcription start site region 9037
Tssr9038 1 136052771 to 136052796 25 + TSS region transcription start site region 9038
Tssr9039 1 136052804 to 136052826 22 + TSS region transcription start site region 9039
Cacna1s 1 136052805 to 136119822 67017 + protein coding gene calcium channel, voltage-dependent, L type, alpha 1S subunit
Tssr9040 1 136052946 to 136052958 12 + TSS region transcription start site region 9040
Gm37014 1 136057181 to 136059433 2252 + unclassified gene predicted gene, 37014
Cpgi804 1 136105292 to 136105926 634 CpG island CpG island 804
Gm37759 1 136116577 to 136119822 3245 - antisense lncRNA gene predicted gene, 37759
Gm15850 1 136127719 to 136131183 3464 - lncRNA gene predicted gene 15850