Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:115102983-118523410

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm4854 1 115219190 to 115219763 573 - pseudogene predicted gene 4854
D1Mit469 1 115272440 to 115272588 148 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-469
D1Mit387 1 115332636 to 115332760 124 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 387
D1Mit285 1 115592434 to 115592559 125 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 285
Gm17916 1 115669409 to 115670583 1174 - pseudogene predicted gene, 17916
Cpgi644 1 115684702 to 115684868 166 CpG island CpG island 644
Tssr8354 1 115684727 to 115684744 17 + TSS region transcription start site region 8354
Cntnap5a 1 115684756 to 116587323 902567 + protein coding gene contactin associated protein-like 5A
Tssr178 1 115684954 to 115684958 4 + TSS region transcription start site region 178
Tssr8355 1 115826322 to 115826327 5 + TSS region transcription start site region 8355
Tssr8356 1 115923977 to 115923983 6 + TSS region transcription start site region 8356
Tssr179 1 116182043 to 116182046 3 - TSS region transcription start site region 179
Gm23393 1 116394342 to 116394413 71 - miRNA gene predicted gene, 23393
Pbbcp1 1 116579930 to 116580115 185 QTL peripheral blood B cell percentage 1
D1Mit188 1 116579930 to 116580115 185 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 188
D1Mit340 1 116616221 to 116616406 185 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 340
Gm28263 1 116633777 to 116634176 399 + pseudogene predicted gene 28263
Gm19965 1 116802983 to 116823410 20427 + protein coding gene predicted gene, 19965
D1Mit310 1 116987606 to 116987710 104 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 310
D1Mit1014 1 117198790 to 117198902 112 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology 1014
D1Mit1015 1 117198872 to 117199035 163 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 1015
Led2 1 117267351 to 85768306 -31499045 QTL late embryonic death 2
Gm17777 1 117392257 to 117393532 1275 - pseudogene predicted gene, 17777
Gm24030 1 117536301 to 117536464 163 + snRNA gene predicted gene, 24030
Gm27785 1 117561230 to 117561339 109 + miRNA gene predicted gene, 27785
Gm28361 1 117578391 to 117578864 473 + pseudogene predicted gene 28361
Zfp813-ps 1 117604158 to 117627062 22904 + pseudogene zinc finger protein 813, pseudogene
Gm28362 1 117662291 to 117678373 16082 + pseudogene predicted gene 28362
Gm28363 1 117726867 to 117727955 1088 + protein coding gene predicted gene 28363
Gm28359 1 117741367 to 117768622 27255 + pseudogene predicted gene 28359
Gm18182 1 117747031 to 117751372 4341 - pseudogene predicted gene, 18182
B020011L13Rik 1 117781135 to 117803359 22224 + protein coding gene RIKEN cDNA B020011L13 gene
Gm28360 1 117830081 to 117854496 24415 + protein coding gene predicted gene 28360
Gm28169 1 117842962 to 117843306 344 + pseudogene predicted gene 28169
Gm7195 1 117898101 to 117899701 1600 + pseudogene predicted gene 7195
Gm28168 1 117928015 to 117949988 21973 + protein coding gene predicted gene 28168
Gm7145 1 117965939 to 117986884 20945 + protein coding gene predicted gene 7145
Gm28358 1 118008769 to 118030415 21646 + pseudogene predicted gene 28358
Gm29489 1 118030315 to 118046849 16534 + pseudogene predicted gene 29489
Gm29490 1 118040649 to 118040990 341 + pseudogene predicted gene 29490
Gm29104 1 118064118 to 118064959 841 + pseudogene predicted gene 29104
Gm46079 1 118144732 to 118148146 3414 - pseudogene predicted gene, 46079
Gm29106 1 118176542 to 118202307 25765 + protein coding gene predicted gene 29106
Gm7200 1 118249863 to 118251025 1162 + pseudogene predicted gene 7200
Tsn 1 118298517 to 118311132 12615 - protein coding gene translin
Tssr8357 1 118299316 to 118299328 12 + TSS region transcription start site region 8357
Tssr13190 1 118299591 to 118299592 1 - TSS region transcription start site region 13190
Cpgi645 1 118310771 to 118311576 805 CpG island CpG island 645
Tssr13191 1 118311163 to 118311221 58 - TSS region transcription start site region 13191
Cpgi646 1 118321686 to 118322306 620 CpG island CpG island 646
Tssr8358 1 118321834 to 118321882 48 + TSS region transcription start site region 8358
Nifk 1 118321839 to 118333822 11983 + protein coding gene nucleolar protein interacting with the FHA domain of MKI67
Tssr8359 1 118321888 to 118321894 6 + TSS region transcription start site region 8359
D1Mit309 1 118342675 to 118342796 121 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 309
Gm28867 1 118359290 to 118362918 3628 + lincRNA gene predicted gene 28867
Cpgi647 1 118388667 to 118389779 1112 CpG island CpG island 647
Tssr13192 1 118388862 to 118388888 26 - TSS region transcription start site region 13192
Clasp1 1 118389058 to 118609462 220404 + protein coding gene CLIP associating protein 1
Tssr8360 1 118389423 to 118389465 42 + TSS region transcription start site region 8360
Tssr8361 1 118389468 to 118389481 13 + TSS region transcription start site region 8361
Cpgi648 1 118389958 to 118390255 297 CpG island CpG island 648
Tssr8362 1 118391224 to 118391230 6 + TSS region transcription start site region 8362
Tssr8363 1 118413841 to 118413845 4 + TSS region transcription start site region 8363
Gm26080 1 118453355 to 118453485 130 - snoRNA gene predicted gene, 26080
2900060B14Rik 1 118458669 to 118459265 596 - antisense lncRNA gene RIKEN cDNA 2900060B14 gene
Gm22710 1 118459141 to 118459265 124 - snRNA gene predicted gene, 22710
Cpgi649 1 118459177 to 118459998 821 CpG island CpG island 649
Tssr13193 1 118459263 to 118459267 4 - TSS region transcription start site region 13193
Tssr8364 1 118459587 to 118459621 34 + TSS region transcription start site region 8364
Tssr8365 1 118469809 to 118469820 11 + TSS region transcription start site region 8365
Gm28466 1 118478604 to 118479591 987 - pseudogene predicted gene 28466
Tssr8366 1 118481448 to 118481457 9 + TSS region transcription start site region 8366
Tssr8367 1 118481462 to 118481477 15 + TSS region transcription start site region 8367
Tssr8368 1 118481504 to 118481515 11 + TSS region transcription start site region 8368
Tssr8369 1 118481694 to 118481716 22 + TSS region transcription start site region 8369
Tssr8370 1 118481966 to 118481979 13 + TSS region transcription start site region 8370
Tssr8371 1 118482004 to 118482024 20 + TSS region transcription start site region 8371
Tssr8372 1 118482041 to 118482063 22 + TSS region transcription start site region 8372
Tssr8373 1 118482186 to 118482194 8 + TSS region transcription start site region 8373