Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 1:106303230-108023239

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124 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Phlpp1 1 106171869 to 106394245 222376 + protein coding gene PH domain and leucine rich repeat protein phosphatase 1
Tssr8310 1 106317214 to 106317243 29 + TSS region transcription start site region 8310
Tssr8311 1 106318638 to 106318650 12 + TSS region transcription start site region 8311
Tssr8312 1 106318700 to 106318707 7 + TSS region transcription start site region 8312
Tssr8313 1 106334539 to 106334580 41 + TSS region transcription start site region 8313
Tssr8314 1 106369899 to 106369901 2 + TSS region transcription start site region 8314
A530053M12Rik 1 106400178 to 106401987 1809 - lincRNA gene RIKEN cDNA A530053M12 gene
Tssr8315 1 106407310 to 106407316 6 + TSS region transcription start site region 8315
Tssr174 1 106439506 to 106439518 12 + TSS region transcription start site region 174
Gm6651 1 106439600 to 106439870 270 + pseudogene predicted gene 6651
Tssr13143 1 106515528 to 106515543 15 - TSS region transcription start site region 13143
Tssr8316 1 106518118 to 106518129 11 + TSS region transcription start site region 8316
Gm41928 1 106520131 to 106529442 9311 + lncRNA gene predicted gene, 41928
Lrncs1 1 106538178 to 106714274 176096 QTL learning-conditioned stimulus 1
Bcl2 1 106538178 to 106714274 176096 - protein coding gene B cell leukemia/lymphoma 2
Tssr8317 1 106541938 to 106541976 38 + TSS region transcription start site region 8317
D630008O14Rik 1 106541943 to 106575045 33102 + antisense lncRNA gene RIKEN cDNA D630008O14 gene
D1Mit515 1 106543050 to 106543273 223 DNA segment DNA Segment, Chr 1, Massachusetts Institute of Technology-515
Tssr13144 1 106543295 to 106543306 11 - TSS region transcription start site region 13144
Mir3473f 1 106546496 to 106546631 135 - miRNA gene microRNA 3473f
D1Mit163 1 106584134 to 106584260 126 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 163
Tssr13145 1 106594439 to 106594453 14 - TSS region transcription start site region 13145
Gm37053 1 106604784 to 106606870 2086 - lncRNA gene predicted gene, 37053
Tssr13146 1 106606791 to 106606794 3 - TSS region transcription start site region 13146
Tssr13147 1 106608519 to 106608523 4 - TSS region transcription start site region 13147
Tssr13148 1 106642213 to 106642216 3 - TSS region transcription start site region 13148
Tssr13149 1 106642264 to 106642275 11 - TSS region transcription start site region 13149
Tssr13150 1 106664269 to 106664273 4 - TSS region transcription start site region 13150
Tssr13151 1 106695711 to 106695725 14 - TSS region transcription start site region 13151
Tssr13152 1 106705519 to 106705523 4 - TSS region transcription start site region 13152
Tssr13153 1 106705832 to 106705835 3 - TSS region transcription start site region 13153
Tssr13154 1 106711575 to 106711588 13 - TSS region transcription start site region 13154
Tssr13155 1 106711598 to 106711609 11 - TSS region transcription start site region 13155
Cpgi636 1 106712342 to 106712940 598 CpG island CpG island 636
Tssr13156 1 106712359 to 106712384 25 - TSS region transcription start site region 13156
Tssr13157 1 106712388 to 106712428 40 - TSS region transcription start site region 13157
Tssr13158 1 106712429 to 106712456 27 - TSS region transcription start site region 13158
Tssr8318 1 106712546 to 106712557 11 + TSS region transcription start site region 8318
Cpgi637 1 106713597 to 106714914 1317 CpG island CpG island 637
Tssr13159 1 106713915 to 106713924 9 - TSS region transcription start site region 13159
Tssr13160 1 106713962 to 106714049 87 - TSS region transcription start site region 13160
Tssr13161 1 106714217 to 106714330 113 - TSS region transcription start site region 13161
Kdsr 1 106720459 to 106759727 39268 - protein coding gene 3-ketodihydrosphingosine reductase
Tssr13162 1 106724481 to 106724484 3 - TSS region transcription start site region 13162
Tssr13163 1 106744373 to 106744381 8 - TSS region transcription start site region 13163
Cpgi638 1 106759207 to 106760124 917 CpG island CpG island 638
Tssr13164 1 106759651 to 106759658 7 - TSS region transcription start site region 13164
Tssr13165 1 106759660 to 106759688 28 - TSS region transcription start site region 13165
Tssr13166 1 106759693 to 106759725 32 - TSS region transcription start site region 13166
Tssr13167 1 106759727 to 106759748 21 - TSS region transcription start site region 13167
Tssr13168 1 106768979 to 106768984 5 - TSS region transcription start site region 13168
Vps4b 1 106770788 to 106796725 25937 - protein coding gene vacuolar protein sorting 4B
Cpgi639 1 106796130 to 106796894 764 CpG island CpG island 639
Tssr13169 1 106796609 to 106796669 60 - TSS region transcription start site region 13169
Tssr13170 1 106796687 to 106796713 26 - TSS region transcription start site region 13170
Mleu1 1 106858782 to 106858782 0 QTL myeloid leukemia survival 1
Tssr8319 1 106860994 to 106861005 11 + TSS region transcription start site region 8319
Tssr8320 1 106861144 to 106861197 53 + TSS region transcription start site region 8320
Serpinb5 1 106861180 to 106883348 22168 + protein coding gene serine (or cysteine) peptidase inhibitor, clade B, member 5
Tssr8321 1 106861217 to 106861228 11 + TSS region transcription start site region 8321
Pou2f3-rs1 1 106887852 to 106888897 1045 - pseudogene POU domain, class 2, transcription factor 3, related sequence 1
Tssr8322 1 106934441 to 106934464 23 + TSS region transcription start site region 8322
Serpinb12 1 106934449 to 106957080 22631 + protein coding gene serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 12
Tssr8323 1 106934480 to 106934494 14 + TSS region transcription start site region 8323
Tssr8324 1 106934502 to 106934524 22 + TSS region transcription start site region 8324
Tssr8325 1 106934530 to 106934540 10 + TSS region transcription start site region 8325
Tssr8326 1 106938953 to 106938958 5 + TSS region transcription start site region 8326
D1Mit259.2 1 106952585 to 106952732 147 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 259.2
D1Mit259 1 106952699 to 106952833 134 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 259
Tssr8327 1 106980979 to 106980985 6 + TSS region transcription start site region 8327
Serpinb13 1 106980984 to 107001195 20211 + protein coding gene serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 13
Tssr8328 1 106998588 to 106998601 13 + TSS region transcription start site region 8328
Rn4.5s-ps1 1 107004795 to 107005091 296 - pseudogene 4.5s RNA, pseudogene 1
Gm8080 1 107020137 to 107025325 5188 - pseudogene predicted gene 8080
Serpinb3a 1 107045587 to 107052303 6716 - protein coding gene serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 3A
Tssr13171 1 107052331 to 107052345 14 - TSS region transcription start site region 13171
Serpinb3d 1 107078163 to 107083480 5317 - protein coding gene serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 3D
Tssr13172 1 107084132 to 107084139 7 - TSS region transcription start site region 13172
Gm15388 1 107137847 to 107138569 722 - pseudogene predicted gene 15388
Tssr13173 1 107138609 to 107138610 1 - TSS region transcription start site region 13173
D1Mit137 1 107139554 to 107139737 183 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 137
Serpinb3b 1 107153961 to 107161114 7153 - protein coding gene serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 3B
Tssr13174 1 107163230 to 107163239 9 - TSS region transcription start site region 13174
Gm8084 1 107191477 to 107192662 1185 - pseudogene predicted gene 8084
Gm15390 1 107253553 to 107254290 737 - pseudogene predicted gene 15390
Serpinb3c 1 107271201 to 107278371 7170 - protein coding gene serine (or cysteine) peptidase inhibitor, clade B, member 3C
Gm8089 1 107290341 to 107302354 12013 - pseudogene predicted gene 8089
Tssr13175 1 107350025 to 107350039 14 - TSS region transcription start site region 13175
Tssr8329 1 107362306 to 107362319 13 + TSS region transcription start site region 8329
Serpinb11 1 107362314 to 107380475 18161 + protein coding gene serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 11
Gm15391 1 107385200 to 107387412 2212 - lincRNA gene predicted gene 15391
Tssr13176 1 107387427 to 107387429 2 - TSS region transcription start site region 13176
Tssr8330 1 107399482 to 107399488 6 + TSS region transcription start site region 8330
Tssr8331 1 107399643 to 107399665 22 + TSS region transcription start site region 8331
Tssr8332 1 107420190 to 107420197 7 + TSS region transcription start site region 8332
Tssr8333 1 107422681 to 107422695 14 + TSS region transcription start site region 8333
Serpinb7 1 107422689 to 107452689 30000 + protein coding gene serine (or cysteine) peptidase inhibitor, clade B, member 7
Gm24553 1 107440047 to 107440177 130 - snoRNA gene predicted gene, 24553
Tssr8334 1 107511416 to 107511431 15 + TSS region transcription start site region 8334
Serpinb2 1 107511423 to 107535478 24055 + protein coding gene serine (or cysteine) peptidase inhibitor, clade B, member 2
Tssr8335 1 107511433 to 107511457 24 + TSS region transcription start site region 8335
Tssr8336 1 107511463 to 107511468 5 + TSS region transcription start site region 8336
Tssr8337 1 107511489 to 107511502 13 + TSS region transcription start site region 8337
Tssr8338 1 107511527 to 107511532 5 + TSS region transcription start site region 8338
Tssr8339 1 107529003 to 107529014 11 + TSS region transcription start site region 8339
Serpinb10 1 107529003 to 107549271 20268 + polymorphic pseudogene serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 10
Tssr8340 1 107529018 to 107529058 40 + TSS region transcription start site region 8340
Gm18249 1 107558899 to 107560673 1774 - pseudogene predicted gene, 18249
D1Mit417 1 107565868 to 107565982 114 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 417
Tssr8341 1 107589957 to 107589978 21 + TSS region transcription start site region 8341
Tssr8342 1 107589997 to 107590040 43 + TSS region transcription start site region 8342
Serpinb8 1 107590006 to 107610484 20478 + protein coding gene serine (or cysteine) peptidase inhibitor, clade B, member 8
Tssr8343 1 107590058 to 107590113 55 + TSS region transcription start site region 8343
D1Mit388 1 107606359 to 107606500 141 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 388
D1Mit258 1 107646551 to 107646697 146 DNA segment DNA segment, Chr 1, Massachusetts Institute of Technology 258
Gm15389 1 107687008 to 107693514 6506 + lincRNA gene predicted gene 15389
Gm24267 1 107756602 to 107756708 106 - snRNA gene predicted gene, 24267
Gm22438 1 107892974 to 107893105 131 + snoRNA gene predicted gene, 22438
Tssr8344 1 107917254 to 107917263 9 + TSS region transcription start site region 8344
D830032E09Rik 1 107917259 to 107950947 33688 + lincRNA gene RIKEN cDNA D830032E09 gene
Tssr8345 1 107917279 to 107917302 23 + TSS region transcription start site region 8345
Gm18448 1 107952837 to 107953435 598 + pseudogene predicted gene, 18448
Gm28282 1 107963122 to 107963307 185 - pseudogene predicted gene 28282
Gm41929 1 107972316 to 107978949 6633 + lncRNA gene predicted gene, 41929