Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 4:123600230-123900235

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53 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Macf1 4 123349633 to 123684360 334727 - protein coding gene microtubule-actin crosslinking factor 1
Tssr43281 4 123607138 to 123607143 5 - TSS region transcription start site region 43281
Tssr43282 4 123612103 to 123612107 4 - TSS region transcription start site region 43282
Tssr43283 4 123613701 to 123613751 50 - TSS region transcription start site region 43283
Tssr43284 4 123613756 to 123613768 12 - TSS region transcription start site region 43284
Tssr43285 4 123613775 to 123613799 24 - TSS region transcription start site region 43285
Tssr43286 4 123613801 to 123613813 12 - TSS region transcription start site region 43286
Tssr43287 4 123613821 to 123613833 12 - TSS region transcription start site region 43287
Mir6398 4 123616420 to 123616521 101 + miRNA gene microRNA 6398
Tssr38863 4 123624765 to 123624805 40 + TSS region transcription start site region 38863
Tssr38864 4 123630251 to 123630256 5 + TSS region transcription start site region 38864
Gm12926 4 123630295 to 123630703 408 + pseudogene predicted gene 12926
Gm35241 4 123644650 to 123647879 3229 - pseudogene predicted gene, 35241
Cpgi14755 4 123663703 to 123665561 1858 CpG island CpG island 14755
Tssr43288 4 123664725 to 123664805 80 - TSS region transcription start site region 43288
Tssr38865 4 123664808 to 123664832 24 + TSS region transcription start site region 38865
Tssr43289 4 123665468 to 123665488 20 - TSS region transcription start site region 43289
Tssr43290 4 123665501 to 123665513 12 - TSS region transcription start site region 43290
Gm12925 4 123665881 to 123671210 5329 + antisense lncRNA gene predicted gene 12925
Cpgi14756 4 123686257 to 123687791 1534 CpG island CpG island 14756
Tssr43291 4 123686707 to 123686729 22 - TSS region transcription start site region 43291
Tssr43292 4 123687237 to 123687307 70 - TSS region transcription start site region 43292
Tssr43293 4 123687319 to 123687356 37 - TSS region transcription start site region 43293
Gm12922 4 123709219 to 123710027 808 - pseudogene predicted gene 12922
Ndufs5 4 123712710 to 123718186 5476 - protein coding gene NADH:ubiquinone oxidoreductase core subunit S5
Cpgi14757 4 123717733 to 123718485 752 CpG island CpG island 14757
Tssr43294 4 123718115 to 123718145 30 - TSS region transcription start site region 43294
Tssr43295 4 123718181 to 123718195 14 - TSS region transcription start site region 43295
Tssr43296 4 123718198 to 123718209 11 - TSS region transcription start site region 43296
Akirin1 4 123735195 to 123750299 15104 - protein coding gene akirin 1
Cpgi14758 4 123749500 to 123750619 1119 CpG island CpG island 14758
Tssr43297 4 123750230 to 123750235 5 - TSS region transcription start site region 43297
Tssr43298 4 123750236 to 123750293 57 - TSS region transcription start site region 43298
Tssr43299 4 123750298 to 123750309 11 - TSS region transcription start site region 43299
Tssr38866 4 123787843 to 123787855 12 + TSS region transcription start site region 38866
Tssr38867 4 123787857 to 123787886 29 + TSS region transcription start site region 38867
Rhbdl2 4 123787874 to 123829904 42030 + protein coding gene rhomboid like 2
Gm12904 4 123838098 to 123839242 1144 + pseudogene predicted gene 12904
Tssr43300 4 123841967 to 123841980 13 - TSS region transcription start site region 43300
Tssr43301 4 123841987 to 123841995 8 - TSS region transcription start site region 43301
Tssr43302 4 123842019 to 123842026 7 - TSS region transcription start site region 43302
Gm46860 4 123845999 to 123849513 3514 - pseudogene predicted gene, 46860
1700121C08Rik 4 123852457 to 123859409 6952 - antisense lncRNA gene RIKEN cDNA 1700121C08 gene
Tssr38868 4 123858342 to 123858353 11 + TSS region transcription start site region 38868
Tssr43303 4 123859520 to 123859558 38 - TSS region transcription start site region 43303
Tssr38869 4 123859651 to 123859700 49 + TSS region transcription start site region 38869
4933427I04Rik 4 123859679 to 123863165 3486 + protein coding gene Riken cDNA 4933427I04 gene
Gm31309 4 123877164 to 123880582 3418 + protein coding gene predicted gene, 31309
Tssr43304 4 123892803 to 123892807 4 - TSS region transcription start site region 43304
Tssr43305 4 123896592 to 123896604 12 - TSS region transcription start site region 43305
Tssr43306 4 123896616 to 123896625 9 - TSS region transcription start site region 43306
Gm40240 4 123897862 to 123901214 3352 - lncRNA gene predicted gene, 40240
Gm26606 4 123898633 to 123904842 6209 - lincRNA gene predicted gene, 26606