Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 11:61741647-62041663

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47 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prpsap2 11 61729650 to 61762088 32438 - protein coding gene phosphoribosyl pyrophosphate synthetase-associated protein 2
Tssr108374 11 61761583 to 61761590 7 - TSS region transcription start site region 108374
Cpgi3015 11 61761775 to 61762292 517 CpG island CpG island 3015
Tssr108375 11 61762040 to 61762082 42 - TSS region transcription start site region 108375
Ulk2 11 61775649 to 61855073 79424 - protein coding gene unc-51 like kinase 2
D11Mit260 11 61795994 to 61796088 94 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 260
Pid3 11 61795994 to 88808902 27012908 QTL prion incubation determinant 3
Tssr108376 11 61808646 to 61808650 4 - TSS region transcription start site region 108376
Cpgi3016 11 61854047 to 61855542 1495 CpG island CpG island 3016
Tssr108377 11 61854873 to 61854884 11 - TSS region transcription start site region 108377
Tssr108378 11 61855018 to 61855025 7 - TSS region transcription start site region 108378
Tssr108379 11 61855026 to 61855069 43 - TSS region transcription start site region 108379
Tssr108380 11 61855082 to 61855097 15 - TSS region transcription start site region 108380
Tssr101983 11 61855130 to 61855141 11 + TSS region transcription start site region 101983
Tssr108381 11 61855301 to 61855339 38 - TSS region transcription start site region 108381
A530017D24Rik 11 61864568 to 61868058 3490 - lincRNA gene RIKEN cDNA A530017D24 gene
Gm26964 11 61865475 to 61867639 2164 + lincRNA gene predicted gene, 26964
Akap10 11 61871307 to 61930252 58945 - protein coding gene A kinase (PRKA) anchor protein 10
Tssr108382 11 61878658 to 61878664 6 - TSS region transcription start site region 108382
A430106A12Rik 11 61878735 to 61881451 2716 unclassified non-coding RNA gene RIKEN cDNA A430106A12 gene
Tssr108383 11 61891647 to 61891663 16 - TSS region transcription start site region 108383
Tssr108384 11 61915172 to 61915173 1 - TSS region transcription start site region 108384
Tssr108385 11 61915193 to 61915208 15 - TSS region transcription start site region 108385
Tssr108386 11 61927019 to 61927045 26 - TSS region transcription start site region 108386
Cpgi3017 11 61929594 to 61930557 963 CpG island CpG island 3017
Tssr108387 11 61930197 to 61930243 46 - TSS region transcription start site region 108387
Tssr108388 11 61930246 to 61930257 11 - TSS region transcription start site region 108388
Gm23721 11 61936446 to 61936552 106 - snRNA gene predicted gene, 23721
Gm12273 11 61950917 to 61952736 1819 + lincRNA gene predicted gene 12273
Cpgi3018 11 61956657 to 61957431 774 CpG island CpG island 3018
Specc1 11 61956763 to 62223013 266250 + protein coding gene sperm antigen with calponin homology and coiled-coil domains 1
Tssr101984 11 61956780 to 61956791 11 + TSS region transcription start site region 101984
Tssr101985 11 61956796 to 61956831 35 + TSS region transcription start site region 101985
Gm12274 11 61973967 to 61974351 384 - pseudogene predicted gene 12274
Tssr101986 11 61976085 to 61976096 11 + TSS region transcription start site region 101986
Gm17912 11 61979081 to 61979580 499 - pseudogene predicted gene, 17912
Tssr101987 11 61982296 to 61982297 1 + TSS region transcription start site region 101987
Tssr101988 11 61984591 to 61984609 18 + TSS region transcription start site region 101988
D11Mit157 11 61992467 to 61992611 144 DNA segment DNA segment, Chr 11, Massachusetts Institute of Technology 157
Tssr3516 11 62005335 to 62005344 9 + TSS region transcription start site region 3516
Tssr101989 11 62005377 to 62005391 14 + TSS region transcription start site region 101989
Tssr101990 11 62005395 to 62005411 16 + TSS region transcription start site region 101990
Tssr101991 11 62005774 to 62005783 9 + TSS region transcription start site region 101991
Tssr101992 11 62005784 to 62005795 11 + TSS region transcription start site region 101992
Tssr101993 11 62006511 to 62006552 41 + TSS region transcription start site region 101993
Tssr101994 11 62028654 to 62028657 3 + TSS region transcription start site region 101994
Gm39988 11 62038464 to 62054431 15967 - lncRNA gene predicted gene, 39988